News: Our second colecting trip in Panama for the PANCOING project, funded by Fundacion BBVA, is ready to go. It will last from 1st June to 22nd June 2008. DNA barcodes from more than 200 samples are already in our databases.
Aligenment Tools
MAFFT
MUSCLE
PROTAL2DNA
REV TRANS
BlastAlign
HMMER
PRANKER
T-COFFEE
POA (Partial Oder Alignment)
SATCHMO simultaneous Aligenment&Tree search
CLUSTAL W (EBI)
CLUSTAL W (Univ. Kyoto)
Sequence Tools
Gap Coder
SEQSTATE (gap recoding)
DNA SEQ CONVERSION
DNA REV COMP
SEQ MANIPULATION SUITE (Univ. Alberta)
WEB IN (EMBL SEQ submission tool)
RESTRICTION MAPPER
SQUIZZ (SEQ & ALIGNMENT conversion tool)
GENETIC CODE VIEW
FaBox
EST Explorer pipeline
Bioinformatic Suites (multiple phylogenetic programs)
PHYLEMON
Baylor College of Medicine
EMBOSS TOOLS (Pasteur)
Pasteur Institute
European Bioinformatic Institute
IUBio SOFTWARE SECTION (Indiana)
Bioinfolab Moriyama Lab (Nebrasca)
Joe Felsenstein's web page
Bioperl Scripts
Mol Biol Center Madrid
SoftLinks Sergios-Orestis
PHYLOBUILDER
BIOPERL SCRIPTS
Primer Design & Primer Calculators
NETPRIMER (Premierbiosoft)
OLIGO CALC (Oligonucleotide Properties Calculator)
Primer3
Tree Building Tools
MrBayes parallel
RAxML BlackBox
PHYML
SUPERTREE
CLANN
POY
BALI-PHY
TNT parsimony
Databases
BLAST ncbi
PUBMED
NCBI
SRS at EBI
Journal Titles and Abbreviations
Useful Links
For futher information click on the Pancoding logo
Research
& Projects
Joan Pons CV
Lab Members
Pictures
Publication List
Prácticas
Other useful stuff
Open Source Software
Cambridge Dictionary
Diccionari catala-valencia-balear
Diccionario Español-Inglés
European Research Council
El Jueves
Systematic Biology
p calculator Chi-Square test
Other Evolutionary Biology Labs
EvoLab - U Pompeu Fabra Barcelona
Evo Lab - UC Berkeley
Alfried Vogler - Imperial College
Miquel A. Arnedo - U Barcelona
Salvador Carranza - U Barcelona
Rafael Zardoya - MNCN Madrid
Ignacio Ribera - MNCN Madrid
Michael Balke - ZSM Munich
Damia Jaume - IMEDEA
Carlos Juan - UIB Baleares Spain
Updated 22/May/2008
Mitogenomics
DOGMA dual organel annotator
MITOME mitochondrial genome database
mtviz mitochondrial drawing tool
CREX mtDNA rearrangements
Zoology - Molecular Systematics Lab
Group leader Joan Pons
